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The peacock blenny Salaria pavo is notorious for its extreme male sexual polymorphism, with large males defending nests and younger reproductive males mimicking the appearance and behavior of females to parasitically fertilize eggs. The lack of a reference genome has, to date, limited the understanding of the genetic basis of the species phenotypic plasticity. Here, we present the first reference genome assembly of the peacock blenny using PacBio HiFi long-reads and Hi-C sequencing data. The final assembly of the S. pavo genome spanned 735.90 Mbp, with a contig N50 of 3.69 Mbp and a scaffold N50 of 31.87 Mbp. A total of 98.77% of the assembly was anchored to 24 chromosomes. In total, 24,008 protein-coding genes were annotated, and 99.0% of BUSCO genes were fully represented. Comparative analyses with closely related species showed that 86.2% of these genes were assigned to orthogroups. This high-quality genome of S. pavo will be a valuable resource for future research on this species’ reproductive plasticity and evolutionary history.
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<jats:p>Antibiotic pollution poses a serious environmental concern worldwide, posing risks to ecosystems and human well-being. Transforming waste activated sludge into adsorbents for antibiotic removal aligns with the concept of utilizing waste to treat waste. However, the adsorption efficiency of these adsorbents is currently limited. This study identified KOH modification as the most effective method for enhancing tetracycline (TC) adsorption by sludge biochar through a comparative analysis of acid, alkali, and oxidant modifications. The adsorption characteristics of TC upon unmodified sludge biochar (BC) as well as KOH-modified sludge biochar (BC-KOH) were investigated in terms of equilibrium, kinetics, and thermodynamics. BC-KOH exhibited higher porosity, greater specific surface area, and increased abundance of oxygen-based functional groups compared to BC. The TC adsorption on BC-KOH conformed the Elovich and Langmuir models, with a maximum adsorption capacity of 243.3 mg/g at 298 K. The adsorption mechanisms included ion exchange, hydrogen bonding, pore filling, and electrostatic adsorption, as well as π-π interactions. Interference with TC adsorption on BC-KOH was observed with HCO3−, PO43−, Ca2+, and Mg2+, whereas Cl−, NO3−, and SO42− ions exhibited minimal impact on the adsorption process. Following three cycles of utilization, there was a slight 5.94% reduction in the equilibrium adsorption capacity, yet the adsorption capacity remained 4.5 times greater than that of unmodified sludge BC, underscoring its significant potential for practical applications. This research provided new insights to the production and application of sludge biochar for treating antibiotic-contaminated wastewater.</jats:p>
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<jats:p>To comply with the United Nations Sustainable Development Goals (UN SDGs), in particular with SDG 3, SDG 11, and SDG 13, a reliable air pollution prediction model must be developed to construct a sustainable, safe, and resilient city and mitigate climate change for a double win. Machine learning (ML) and deep learning (DL) models have been applied to datasets in Macau to predict the daily levels of roadside air pollution in the Macau peninsula, situated near the historical sites of Macau. Macau welcomed over 28 million tourists in 2023 as a popular tourism destination. Still, an accurate air quality forecast has not been in place for many years due to the lack of a reliable emission inventory. This work will develop a dependable air pollution prediction model for Macau, which is also the novelty of this study. The methods, including random forest (RF), support vector regression (SVR), artificial neural network (ANN), recurrent neural network (RNN), long short-term memory (LSTM), and gated recurrent unit (GRU), were applied and successful in the prediction of daily air pollution levels in Macau. The prediction model was trained using the air quality and meteorological data from 2013 to 2019 and validated using the data from 2020 to 2021. The model performance was evaluated based on the root mean square error (RMSE), mean absolute error (MAE), Pearson’s correlation coefficient (PCC), and Kendall’s tau coefficient (KTC). The RF model best predicted PM10, PM2.5, NO2, and CO concentrations with the highest PCC and KTC in a daily air pollution prediction. In addition, the SVR model had the best stability and repeatability compared to other models, with the lowest SD in RMSE, MAE, PCC, and KTC after five model runs. Therefore, the results of this study show that the RF model is more efficient and performs better than other models in the prediction of air pollution for the dataset of Macau.</jats:p>
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<jats:p>The mass production of uniform, high-quality polymer nanofibers remains a challenge. To enhance spinning yield, a multi-string standing wave electrospinning apparatus was developed by incorporating a string array into a standing wave electrospinning device. The process parameters such as string spacing, quantity, and phase difference were optimized, and their effects on the electric field distribution within the spinning area were analyzed using electric field simulations. When the string spacing was less than 40 mm or the number of strings exceeded two, the electric field strength significantly decreased due to electric field interference. However, this interference could be effectively mitigated by setting the string standing wave phase difference to half a period. The optimal string array parameters were identified as string spacing of 40 mm, two strings, and a phase difference of half a period. Multi-string standing wave electrospinning produced fibers with diameters similar to those obtained with single-string standing wave electrospinning (178 ± 72 nm vs. 173 ± 48 nm), but the yield increased by 88.7%, reaching 2.17 g/h, thereby demonstrating the potential for the large-scale production of nanofibers. This work further refined the standing wave electrospinning process and provided valuable insights for optimizing wire-type electrospinning processes.</jats:p>
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The convergence of air pollution control and climate change mitigation is critical in the pursuit of sustainable development. Therefore, technological innovations are pivotal in addressing the dual challenges of air pollution and global warming. This work presents an overview of technological solutions aimed at reducing air pollution and mitigating GHG emissions. While evaluating their technological strengths and limitations in real applications, this work offers a framework to promote a transition toward blue skies and net-zero emissions. This work also identifies the main sources and negative impacts of air pollution on public health and the environment. A literature overview of published articles from 1976 to 2024 showed that integrating emission reduction technologies are vital in real-word applications. More than 98% of the SO2 in the flue gas can be removed using cutting-edge desulfurization technology. SO2 is eliminated from the environment either unaltered or as sulfuric acid and sulfates. Meanwhile, thermal incinerators boast an impressive efficiency, capable of eliminating 99% of gaseous pollutants. Although existing pollution control technologies are promising to mitigate climate change, they still require further research, development, demonstration, and deployment to overcome barriers and achieve their potential. By examining the effectiveness of control technologies and proposing adaptable strategies, this work highlights the potential of integrating air quality improvement efforts with climate actions. Not only this addresses the global need for cleaner air, but also contributes to the overarching goal of climate stabilization. © The Author(s), under exclusive licence to the Institute of Chemistry, Slovak Academy of Sciences 2024.
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Anticancer peptides (ACPs) are promising future therapeutics, but their experimental discovery remains time-consuming and costly. To accelerate the discovery process, we propose a computational screening workflow to identify, filter, and prioritize peptide sequences based on predicted class probability, antitumor activity, and toxicity. The workflow was applied to identify novel ACPs with potent activity against colorectal cancer from the genome sequences of Candida albicans. As a result, four candidates were identified and validated in the HCT116 colon cancer cell line. Among them, PCa1 and PCa2 emerged as the most potent, displaying IC50 values of 3.75 and 56.06 μM, respectively, and demonstrating a 4-fold selectivity for cancer cells over normal cells. In the colon xenograft nude mice model, the administration of both peptides resulted in substantial inhibition of tumor growth without causing significant adverse effects. In conclusion, this work not only contributes a proven computational workflow for ACP discovery but also introduces two peptides, PCa1 and PCa2, as promising candidates poised for further development as targeted therapies for colon cancer. The method as a web service is available at https://app.cbbio.online/acpep/home and the source code at https://github.com/cartercheong/AcPEP_classification.git.
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<jats:p>Rapid urbanization and changing climatic procedures can activate the present surface urban heat island (SUHI) effect. An SUHI was considered by temperature alterations among urban and rural surroundings. The urban zones were frequently warmer than the rural regions because of population pressure, urbanization, vegetation insufficiency, industrialization, and transportation systems. This investigation analyses the Surface-UHI (SUHI) influence in Kolkata Municipal Corporation (KMC), India. Growing land surface temperature (LST) may cause an SUHI and impact ecological conditions in urban regions. The urban thermal field variation index (UTFVI) served as a qualitative and quantitative barrier to the SUHI susceptibility. The maximum likelihood approach was used in conjunction with supervised classification techniques to identify variations in land use and land cover (LULC) over a chosen year. The outcomes designated a reduction of around 1354.86 Ha, 653.31 Ha, 2286.9 Ha, and 434.16 Ha for vegetation, bare land, grassland, and water bodies, correspondingly. Temporarily, from the years 1991–2021, the built-up area increased by 4729.23 Ha. The highest LST increased by around 7.72 °C, while the lowest LST increased by around 5.81 °C from 1991 to 2021. The vegetation index and LST showed a negative link, according to the correlation analyses; however, the built-up index showed an experimentally measured positive correlation. This inquiry will compel the administration, urban planners, and stakeholders to observe humanistic activities and thus confirm sustainable urban expansion.</jats:p>
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The investigation of pharmaceuticals as emerging contaminants in marine biota has been insufficient. In this study, we examined the presence of 51 pharmaceuticals in edible oysters along the coasts of the East and South China Seas. Only nine pharmaceuticals were detected. The mean concentrations of all measured pharmaceuticals in oysters per site ranged from 0.804 to 15.1 ng g–1 of dry weight, with antihistamines being the most common. Brompheniramine and promethazine were identified in biota samples for the first time. Although no significant health risks to humans were identified through consumption of oysters, 100–1000 times higher health risks were observed for wildlife like water birds, seasnails, and starfishes. Specifically, sea snails that primarily feed on oysters were found to be at risk of exposure to ciprofloxacin, brompheniramine, and promethazine. These high risks could be attributed to the monotonous diet habits and relatively limited food sources of these organisms. Furthermore, taking chirality into consideration, chlorpheniramine in the oysters was enriched by the S-enantiomer, with a relative potency 1.1–1.3 times higher when chlorpheniramine was considered as a racemate. Overall, this study highlights the prevalence of antihistamines in seafood and underscores the importance of studying enantioselectivities of pharmaceuticals in health risk assessments.
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The marine medaka is emerging as a potential behavioral model organism for ocean studies, namely on marine ecotoxicology. However, not much is known on the behavior of the species and behavioral assays lack standardization. This study assesses the marine medaka as a potential model for chemical communication. We investigated how short exposure to visual and chemical cues mediated the stress response to social isolation with the light/dark preference test (LDPT) and the open field test (OFT). After a 5-day isolation period, and 1 h before testing, isolated fish were randomly assigned to one of four groups: (1) placed in visual contact with conspecifics; (2) exposed to a flow of holding water from a group of conspecifics; (3) exposed to both visual and chemical cues from conspecifics; or (4) not exposed to any stimuli (controls). During the LDPT, the distance traveled and transitions between zones were more pronounced in animals exposed to the conspecific's chemical stimuli. The time spent in each area did not differ between the groups, but a clear preference for the bright area in all animals indicates robust phototaxis. During the OFT, animals exposed only to chemical cues initially traveled more than those exposed to visual or both stimuli, and displayed lower thigmotaxis. Taken together, results show that chemical cues play a significant role in exploratory behavior in this species and confirm the LDPT and OFT as suitable tests for investigating chemical communication in this species.